Claude dePamphilis

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Professor, Biology

Research Summary

Evolution of the flower and the floral developmental program, the study of parasitic plants, chloroplast genome and phylogenomic evolution and Floral Genome Project.

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Recent Publications

The geography of parasite local adaptation to host communities

Bellis, E. S., McLaughlin, C. M., dePamphilis, C. W. & Lasky, J. R., Aug 2021, In: Ecography. 44, 8, p. 1205-1217 13 p.

Research output: Contribution to journalArticlepeer-review

Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the chocolate tree

Hämälä, T., Wafula, E. K., Guiltinan, M. J., Ralph, P. E., dePamphilis, C. W. & Tiffin, P., Aug 31 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 35, e2102914118.

Research output: Contribution to journalArticlepeer-review

Transcriptomics of Differential Ripening in ‘d’Anjou’ Pear (Pyrus communis L.)

Honaas, L., Hargarten, H., Hadish, J., Ficklin, S. P., Serra, S., Musacchi, S., Wafula, E., Mattheis, J., dePamphilis, C. W. & Rudell, D., Jun 16 2021, In: Frontiers in Plant Science. 12, 609684.

Research output: Contribution to journalArticlepeer-review

A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants

Käfer, J., Bewick, A., Andres-Robin, A., Lapetoule, G., Harkess, A., Caïus, J., Fogliani, B., Gâteblé, G., Ralph, P., dePamphilis, C. W., Picard, F., Scutt, C., Marais, G. A. B. & Leebens-Mack, J., 2021, (Accepted/In press) In: New Phytologist.

Research output: Contribution to journalArticlepeer-review

Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome

Qin, L., Hu, Y., Wang, J., Wang, X., Zhao, R., Shan, H., Li, K., Xu, P., Wu, H., Yan, X., Liu, L., Yi, X., Wanke, S., Bowers, J. E., Leebens-Mack, J. H., dePamphilis, C. W., Soltis, P. S., Soltis, D. E., Kong, H. & Jiao, Y., Sep 2021, In: Nature Plants. 7, 9, p. 1239-1253 15 p.

Research output: Contribution to journalArticlepeer-review

In silico identification and structure function analysis of a putative coclaurine N-methyltransferase from Aristolochia fimbriata

Ali, R., Jiao, Y., Kerr Wall, P., Patching, S. G., Ahmad, I., Lutfulla, G. & dePamphilis, C. W., Apr 2020, In: Computational Biology and Chemistry. 85, 107201.

Research output: Contribution to journalArticlepeer-review

Genomics of sorghum local adaptation to a parasitic plant

Bellis, E. S., Kelly, E. A., Lorts, C. M., Gao, H., DeLeo, V. L., Rouhan, G., Budden, A., Bhaskara, G. B., Hu, Z., Muscarella, R., Timko, M. P., Nebie, B., Runo, S. M., Chilcoat, N. D., Juenger, T. E., Morris, G. P., dePamphilis, C. W. & Lasky, J. R., Feb 25 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 8, p. 4243-4251 9 p.

Research output: Contribution to journalArticlepeer-review

Widely distributed variation in tolerance to Phytophthora palmivora in four genetic groups of cacao

Fister, A. S., Leandro-Muñoz, M. E., Zhang, D., Marden, J. H., Tiffin, P., dePamphilis, C., Maximova, S. & Guiltinan, M. J., Feb 1 2020, In: Tree Genetics and Genomes. 16, 1, 1.

Research output: Contribution to journalArticlepeer-review

Gene Expression Modularity Reveals Footprints of Polygenic Adaptation in Theobroma cacao

Hämälä, T., Guiltinan, M. J., Marden, J. H., Maximova, S. N., Depamphilis, C. W. & Tiffin, P., Jan 1 2020, In: Molecular biology and evolution. 37, 1, p. 110-123 14 p.

Research output: Contribution to journalArticlepeer-review

GetOrganelle: A fast and versatile toolkit for accurate de novo assembly of organelle genomes

Jin, J. J., Yu, W. B., Yang, J. B., Song, Y., Depamphilis, C. W., Yi, T. S. & Li, D. Z., Sep 10 2020, In: Genome biology. 21, 1, 241.

Research output: Contribution to journalArticlepeer-review