Claude dePamphilis

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Professor, Biology

Research Summary

Evolution of the flower and the floral developmental program, the study of parasitic plants, chloroplast genome and phylogenomic evolution and Floral Genome Project.

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Recent Publications

The geography of parasite local adaptation to host communities

Bellis, E. S., McLaughlin, C. M., dePamphilis, C. W. & Lasky, J. R., Aug 2021, In: Ecography. 44, 8, p. 1205-1217 13 p.

Research output: Contribution to journalArticlepeer-review

In silico identification and structure function analysis of a putative coclaurine N-methyltransferase from Aristolochia fimbriata

Ali, R., Jiao, Y., Kerr Wall, P., Patching, S. G., Ahmad, I., Lutfulla, G. & dePamphilis, C. W., Apr 2020, In: Computational Biology and Chemistry. 85, 107201.

Research output: Contribution to journalArticlepeer-review

Genomics of sorghum local adaptation to a parasitic plant

Bellis, E. S., Kelly, E. A., Lorts, C. M., Gao, H., DeLeo, V. L., Rouhan, G., Budden, A., Bhaskara, G. B., Hu, Z., Muscarella, R., Timko, M. P., Nebie, B., Runo, S. M., Chilcoat, N. D., Juenger, T. E., Morris, G. P., dePamphilis, C. W. & Lasky, J. R., Feb 25 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 8, p. 4243-4251 9 p.

Research output: Contribution to journalArticlepeer-review

Widely distributed variation in tolerance to Phytophthora palmivora in four genetic groups of cacao

Fister, A. S., Leandro-Muñoz, M. E., Zhang, D., Marden, J. H., Tiffin, P., dePamphilis, C., Maximova, S. & Guiltinan, M. J., Feb 1 2020, In: Tree Genetics and Genomes. 16, 1, 1.

Research output: Contribution to journalArticlepeer-review

Gene Expression Modularity Reveals Footprints of Polygenic Adaptation in Theobroma cacao

Hämälä, T., Guiltinan, M. J., Marden, J. H., Maximova, S. N., Depamphilis, C. W. & Tiffin, P., Jan 1 2020, In: Molecular biology and evolution. 37, 1, p. 110-123 14 p.

Research output: Contribution to journalArticlepeer-review

GetOrganelle: A fast and versatile toolkit for accurate de novo assembly of organelle genomes

Jin, J. J., Yu, W. B., Yang, J. B., Song, Y., Depamphilis, C. W., Yi, T. S. & Li, D. Z., Sep 10 2020, In: Genome biology. 21, 1, 241.

Research output: Contribution to journalArticlepeer-review

SHR4z, a novel decoy effector from the haustorium of the parasitic weed Striga gesnerioides, suppresses host plant immunity

Su, C., Liu, H., Wafula, E. K., Honaas, L., de Pamphilis, C. W. & Timko, M. P., May 1 2020, In: New Phytologist. 226, 3, p. 891-908 18 p.

Research output: Contribution to journalArticlepeer-review

Comparative Metabolomics of Early Development of the Parasitic Plants Phelipanche aegyptiaca and Triphysaria versicolor

Clermont, K., Collakova, E., Westwood, J. H., Yang, Z., dePamphilis, C. W. & Yoder, J. I., 2019, In: Metabolites. 9, 6, 114.

Research output: Contribution to journalReview articlepeer-review

Co-expression networks provide insights into molecular mechanisms of postharvest temperature modulation of apple fruit to reduce superficial scald

Honaas, L. A., Hargarten, H. L., Ficklin, S. P., Hadish, J. A., Wafula, E., dePamphilis, C. W., Mattheis, J. P. & Rudell, D. R., Mar 2019, In: Postharvest Biology and Technology. 149, p. 27-41 15 p.

Research output: Contribution to journalArticlepeer-review

Risk versus reward: Host dependent parasite mortality rates and phenotypes in the facultative generalist Triphysaria versicolor

Honaas, L. A., Jones, S., Farrell, N., Kamerow, W., Zhang, H., Vescio, K., Altman, N. S., Yoder, J. I. & Depamphilis, C. W., Aug 1 2019, In: BMC plant biology. 19, 1, 334.

Research output: Contribution to journalArticlepeer-review