Research Summary
Evolution of the flower and the floral developmental program, the study of parasitic plants, chloroplast genome and phylogenomic evolution and Floral Genome Project.
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Research Keywords
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Projects
Recent Publications
Extra-large G proteins have extra-large effects on agronomic traits and stress tolerance in maize and rice
Cantos, C. F., dePamphilis, C. W. & Assmann, S. M., Sep 2023, In: Trends in Plant Science. 28, 9, p. 1033-1044 12 p.Research output: Contribution to journal ⺠Review article ⺠peer-review
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages
Timilsena, P. R., Barrett, C. F., Piñeyro-Nelson, A., Wafula, E. K., Ayyampalayam, S., McNeal, J. R., Yukawa, T., Givnish, T. J., Graham, S. W., Pires, J. C., Davis, J. I., Ané, C., Stevenson, D. W., Leebens-Mack, J., MartÃnez-Salas, E., Ãlvarez-Buylla, E. R. & dePamphilis, C. W., Jan 4 2023, In: Genome biology and evolution. 15, 1Research output: Contribution to journal ⺠Article ⺠peer-review
PlantTribes2: Tools for comparative gene family analysis in plant genomics
Wafula, E. K., Zhang, H., Von Kuster, G., Leebens-Mack, J. H., Honaas, L. A. & dePamphilis, C. W., Jan 31 2023, In: Frontiers in Plant Science. 13, 1011199.Research output: Contribution to journal ⺠Article ⺠peer-review
Transcriptomic approach to uncover dynamic events in the development of mid-season sunburn in apple fruit
Waite, J. M., Kelly, E. A., Zhang, H., Hargarten, H. L., Waliullah, S., Altman, N. S., dePamphilis, C. W., Honaas, L. A. & Kalcsits, L., Aug 9 2023, In: G3 (Bethesda, Md.). 13, 8Research output: Contribution to journal ⺠Article ⺠peer-review
De novo Assembly and Comparative Analyses of Mitochondrial Genomes in Piperales
Yu, R., Chen, X., Long, L., Jost, M., Zhao, R., Liu, L., Mower, J. P., dePamphilis, C. W., Wanke, S. & Jiao, Y., Mar 3 2023, In: Genome biology and evolution. 15, 3Research output: Contribution to journal ⺠Article ⺠peer-review
Pervasive Phylogenomic Incongruence Underlies Evolutionary Relationships in Eyebrights (Euphrasia, Orobanchaceae)
Garrett, P., Becher, H., Gussarova, G., dePamphilis, C. W., Ness, R. W., Gopalakrishnan, S. & Twyford, A. D., May 27 2022, In: Frontiers in Plant Science. 13, 869583.Research output: Contribution to journal ⺠Article ⺠peer-review
A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants
Käfer, J., Bewick, A., Andres-Robin, A., Lapetoule, G., Harkess, A., Caïus, J., Fogliani, B., Gâteblé, G., Ralph, P., dePamphilis, C. W., Picard, F., Scutt, C., Marais, G. A. B. & Leebens-Mack, J., Feb 2022, In: New Phytologist. 233, 4, p. 1636-1642 7 p.Research output: Contribution to journal ⺠Article ⺠peer-review
Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes
Timilsena, P. R., Wafula, E. K., Barrett, C. F., Ayyampalayam, S., McNeal, J. R., Rentsch, J. D., McKain, M. R., Heyduk, K., Harkess, A., Villegente, M., Conran, J. G., Illing, N., Fogliani, B., Ané, C., Pires, J. C., Davis, J. I., Zomlefer, W. B., Stevenson, D. W., Graham, S. W., Givnish, T. J., & 2 others, Nov 22 2022, In: Frontiers in Plant Science. 13, 876779.Research output: Contribution to journal ⺠Article ⺠peer-review
Building a foundation for gene family analysis in Rosaceae genomes with a novel workflow: A case study in Pyrus architecture genes
Zhang, H., Wafula, E. K., Eilers, J., Harkess, AE., Ralph, P. E., Timilsena, P. R., dePamphilis, C. W., Waite, J. M. & Honaas, L. A., Nov 14 2022, In: Frontiers in Plant Science. 13, 975942.Research output: Contribution to journal ⺠Article ⺠peer-review
The geography of parasite local adaptation to host communities
Bellis, E. S., McLaughlin, C. M., dePamphilis, C. W. & Lasky, J. R., Aug 2021, In: Ecography. 44, 8, p. 1205-1217 13 p.Research output: Contribution to journal ⺠Article ⺠peer-review
Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the chocolate tree
Hämälä, T., Wafula, E. K., Guiltinan, M. J., Ralph, P. E., dePamphilis, C. W. & Tiffin, P., Aug 31 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 35, e2102914118.Research output: Contribution to journal ⺠Article ⺠peer-review
Transcriptomics of Differential Ripening in âdâAnjouâ Pear (Pyrus communis L.)
Honaas, L., Hargarten, H., Hadish, J., Ficklin, S. P., Serra, S., Musacchi, S., Wafula, E., Mattheis, J., dePamphilis, C. W. & Rudell, D., Jun 16 2021, In: Frontiers in Plant Science. 12, 609684.Research output: Contribution to journal ⺠Article ⺠peer-review
Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome
Qin, L., Hu, Y., Wang, J., Wang, X., Zhao, R., Shan, H., Li, K., Xu, P., Wu, H., Yan, X., Liu, L., Yi, X., Wanke, S., Bowers, J. E., Leebens-Mack, J. H., dePamphilis, C. W., Soltis, P. S., Soltis, D. E., Kong, H. & Jiao, Y., Sep 2021, In: Nature Plants. 7, 9, p. 1239-1253 15 p.Research output: Contribution to journal ⺠Article ⺠peer-review
In silico identification and structure function analysis of a putative coclaurine N-methyltransferase from Aristolochia fimbriata
Ali, R., Jiao, Y., Kerr Wall, P., Patching, S. G., Ahmad, I., Lutfulla, G. & dePamphilis, C. W., Apr 2020, In: Computational Biology and Chemistry. 85, 107201.Research output: Contribution to journal ⺠Article ⺠peer-review
Genomics of sorghum local adaptation to a parasitic plant
Bellis, E. S., Kelly, E. A., Lorts, C. M., Gao, H., DeLeo, V. L., Rouhan, G., Budden, A., Bhaskara, G. B., Hu, Z., Muscarella, R., Timko, M. P., Nebie, B., Runo, S. M., Chilcoat, N. D., Juenger, T. E., Morris, G. P., dePamphilis, C. W. & Lasky, J. R., Feb 25 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 8, p. 4243-4251 9 p.Research output: Contribution to journal ⺠Article ⺠peer-review