
Andrew Patterson is a professor of molecular toxicology and is the Scientific Director of Metabolomics. He and his students, postdocs, and collaborators focus on understanding the host-metabolite-microbiota communication network—specifically how the manipulation of gut microbiota by diet and/or xenobiotics impacts host metabolites (e.g., bile acids, short chain fatty acids), their metabolism, and how these co-metabolites interact with host nuclear/soluble receptors (e.g., farnesoid X receptor, aryl hydrocarbon receptor). The lab employs a variety of tools, including NMR- and mass spectrometry-based metabolomics, genomics, and conventional and gnotobiotic transgenic mice, to facilitate its study of these pathways and understand their impact on human health and disease.
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Projects
Recent Publications
Phytochemical-Mediated Ah Receptor Activity Is Dependent on Dietary Context
Dong, F., Annalora, A. J., Murray, I. A., Chakraborty, D., Coslo, D. M., Marcus, C., Patterson, A. D. & Perdew, G. H., Mar 2025, In: Nutrients. 17, 5, 876.Research output: Contribution to journal › Article › peer-review
Immunobiology of bile and cholangiocytes
Li, Y., Leung, P. S., Zhang, W., Zhang, S., Liu, Z., Kurth, M., Patterson, A. D., Gershwin, M. E. & Song, J., Feb 2025, In: Journal of Autoimmunity. 151, 103376.Research output: Contribution to journal › Review article › peer-review
In vitro microbiota model recapitulates and predicts individualised sensitivity to dietary emulsifier
Rytter, H., Naimi, S., Wu, G., Lewis, J., Duquesnoy, M., Vigué, L., Tenaillon, O., Belda, E., Vazquez-Gomez, M., Touly, N., Arnone, D., Hao, F., Ley, R. E., Clément, K., Peyrin-Biroulet, L., Patterson, A. D., Gewirtz, A. T. & Chassaing, B., 2025, (Accepted/In press) In: Gut. gutjnl-2024-333925.Research output: Contribution to journal › Article › peer-review
A designed synthetic microbiota provides insight to community function in Clostridioides difficile resistance
Tian, S., Kim, M. S., Zhao, J., Heber, K., Hao, F., Koslicki, D., Tian, S., Singh, V., Patterson, A. D. & Bisanz, J. E., Mar 12 2025, In: Cell Host and Microbe. 33, 3, p. 373-387.e9Research output: Contribution to journal › Article › peer-review
A diet-dependent host metabolite shapes the gut microbiota to protect from autoimmunity
Alexander, M., Upadhyay, V., Rock, R., Ramirez, L., Trepka, K., Puchalska, P., Orellana, D., Ang, Q. Y., Whitty, C., Turnbaugh, J. A., Tian, Y., Dumlao, D., Nayak, R., Patterson, A., Newman, J. C., Crawford, P. A. & Turnbaugh, P. J., Nov 26 2024, In: Cell Reports. 43, 11, 114891.Research output: Contribution to journal › Article › peer-review
Modulation of Ceramide-Induced Apoptosis in Enteric Neurons by Aryl Hydrocarbon Receptor Signaling: Unveiling a New Pathway beyond ER Stress
Anitha, M., Kumar, S. M., Koo, I., Perdew, G. H., Srinivasan, S. & Patterson, A. D., Aug 2024, In: International journal of molecular sciences. 25, 16, 8581.Research output: Contribution to journal › Article › peer-review
Changes in fecal lipidome after treatment with ivacaftor without changes in microbiome or bile acids
Bass, R., Tanes, C., Bittinger, K., Li, Y., Lee, H., Friedman, E. S., Koo, I., Patterson, A. D., Liu, Q., Wu, G. D. & Stallings, V. A., May 2024, In: Journal of Cystic Fibrosis. 23, 3, p. 481-489 9 p.Research output: Contribution to journal › Article › peer-review
Individualized microbiotas dictate the impact of dietary fiber on colitis sensitivity
Bonazzi, E., Bretin, A., Vigué, L., Hao, F., Patterson, A. D., Gewirtz, A. T. & Chassaing, B., Dec 2024, In: Microbiome. 12, 1, 5.Research output: Contribution to journal › Article › peer-review
Immune cell-intrinsic Ah receptor facilitates the expression of antimicrobial REG3G in the small intestine
Chakraborty, D., Coslo, D. M., Murray, I. A., Vijay, A., Patterson, A. D. & Perdew, G. H., Feb 29 2024, In: FASEB Journal. 38, 4, e23471.Research output: Contribution to journal › Article › peer-review
Human Intestinal Microbiome Determines Individualized Inflammatory Response to Dietary Emulsifier Carboxymethylcellulose Consumption
Daniel, N., Wu, G. D., Walters, W., Compher, C., Ni, J., Delaroque, C., Albenberg, L., Ley, R. E., Patterson, A. D., Lewis, J. D., Gewirtz, A. T. & Chassaing, B., Jan 2024, In: CMGH. 17, 2, p. 315-318 4 p.Research output: Contribution to journal › Short survey › peer-review
Reverse metabolomics for the discovery of chemical structures from humans
Gentry, E. C., Collins, S. L., Panitchpakdi, M., Belda-Ferre, P., Stewart, A. K., Carrillo Terrazas, M., Lu, H. H., Zuffa, S., Yan, T., Avila-Pacheco, J., Plichta, D. R., Aron, A. T., Wang, M., Jarmusch, A. K., Hao, F., Syrkin-Nikolau, M., Vlamakis, H., Ananthakrishnan, A. N., Boland, B. S. & Hemperly, A. & 10 others, , Feb 8 2024, In: Nature. 626, 7998, p. 419-426 8 p.Research output: Contribution to journal › Article › peer-review
Sex Dimorphic Effects of Bile Acid Metabolism in Liver Cancer in Mice
Golonka, R. M., Yeoh, B. S., Saha, P., Tian, Y., Chiang, J. Y. L., Patterson, A. D., Gewirtz, A. T., Joe, B. & Kumar, M. V., Jan 2024, In: CMGH. 17, 5, p. 719-735 17 p.Research output: Contribution to journal › Article › peer-review
Optimization of Conventionally Processed Biological Samples for STEM-EDS Elemental Quantification
Gray, J. L., Tian, Y., Ning, G., Cutler, T., Zheng, Y. & Patterson, A. D., Jul 24 2024, In: Microscopy and Microanalysis. 30, 2024, p. 878-880 3 p.Research output: Contribution to journal › Conference article › peer-review
Dietary carbohydrates regulate intestinal colonization and dissemination of Klebsiella pneumoniae
Hecht, A. L., Harling, L. C., Friedman, E. S., Tanes, C., Lee, J., Firrman, J., Hao, F., Tu, V., Liu, L. S., Patterson, A. D., Bittinger, K., Goulian, M. & Wu, G. D., May 1 2024, In: Journal of Clinical Investigation. 134, 9, e174726.Research output: Contribution to journal › Article › peer-review
Magnetic field and ultrasound induced simultaneous wireless energy harvesting
Karan, S. K., Hosur, S., Kashani, Z., Leng, H., Vijay, A., Sriramdas, R., Wang, K., Poudel, B., Patterson, A. D., Kiani, M. & Priya, S., Jan 24 2024, In: Energy and Environmental Science. 17, 6, p. 2129-2144 16 p.Research output: Contribution to journal › Article › peer-review