John E. Carlson

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IEE Research Themes
Affiliate Researcher
Titles and Affiliations
Professor, Ecosystem Science and Management

Research Summary

Conducts research in the areas of genomics, conservation genetics and biotechnology. Genomics research identifies genes, DNA markers and quantitative trait loci governing growth, stress resistance, and plant-microbe interactions in hardwood tree species.

Research Keywords

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Recent Publications

Use of genomic resources to assess adaptive divergence and introgression in oaks

Lazic, D., Hipp, A. L., Carlson, J. E. & Gailing, O., Jun 2021, In: Forests. 12, 6, 690.

Research output: Contribution to journalArticlepeer-review

Phylogenetic analysis based on chloroplast genome uncover evolutionary relationship of all the nine species and six cultivars of tree peony

Guo, L., Guo, S., Xu, J., He, L., Carlson, J. E. & Hou, X., Oct 1 2020, In: Industrial Crops and Products. 153, 112567.

Research output: Contribution to journalArticlepeer-review

Transcriptome profiles of Quercus rubra responding to increased O3 stress

Soltani, N., Best, T., Grace, D., Nelms, C., Shumaker, K., Romero-Severson, J., Moses, D., Schuster, S., Staton, M., Carlson, J. & Gwinn, K., Feb 14 2020, In: BMC genomics. 21, 1, 160.

Research output: Contribution to journalArticlepeer-review

Inter-specific hybridization of Alnus rubra and Alnus rhombifolia: preliminary report of a new taxon and DNA marker resources for bioenergy feedstock production

Stanton, B. J., Best, T., Islam-Faridi, N., Gantz, C., Haiby, K., Johnson, L. J., Shuren, R., Stanish, A., Staton, M., Weathers, T. C., Wu, D. & Carlson, J. E., Oct 1 2020, In: Tree Genetics and Genomes. 16, 5, 70.

Research output: Contribution to journalArticlepeer-review

“A reference genome assembly and adaptive trait analysis of Castanea mollissima ‘Vanuxem,’ a source of resistance to chestnut blight in restoration breeding”

Staton, M., Addo-Quaye, C., Cannon, N., Yu, J., Zhebentyayeva, T., Huff, M., Islam-Faridi, N., Fan, S., Georgi, L. L., Nelson, C. D., Bellis, E., Fitzsimmons, S., Henry, N., Drautz-Moses, D., Noorai, R. E., Ficklin, S., Saski, C., Mandal, M., Wagner, T. K., Zembower, N. & 8 others, Bodénès, C., Holliday, J., Westbrook, J., Lasky, J., Hebard, F. V., Schuster, S. C., Abbott, A. G. & Carlson, J. E., Aug 1 2020, In: Tree Genetics and Genomes. 16, 4, 57.

Research output: Contribution to journalArticlepeer-review

Transcriptome analysis of contrasting resistance to herbivory by Empoasca fabae in two shrub willow species and their hybrid progeny

Wang, W., Carlson, C. H., Smart, L. B. & Carlson, J. E., Jul 2020, In: PloS one. 15, 7 July, e0236586.

Research output: Contribution to journalArticlepeer-review

Factoring Ecological, Societal, and Economic Considerations into Inoculant Development

Bell, T. H., Kaminsky, L. M., Gugino, B. K., Carlson, J. E., Malik, R. J., Hockett, K. L. & Trexler, R. V., Jun 2019, In: Trends in Biotechnology. 37, 6, p. 572-573 2 p.

Research output: Contribution to journalArticlepeer-review

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Bell, T. H., Hockett, K., Alcalá-Briseño, R. I., Barbercheck, M., Beattie, G. A., Bruns, M. A., Carlson, J., Chung, T., Collins, A., Emmett, B., Esker, P., Garrett, K., Glenna, L., Gugino, B. K., Jimenez Gasco, M. D. M., Kinkel, L., Kovac, J., Kowalski, K., Kuldau, G., Leveau, J. & 10 others, Michalska-Smith, M., Myrick, J., Peter, K., Salazar, M. V., Shade, A., Stopnisek, N., Tan, X., Welty, A., Wickings, K. & Yergeau, E., Mar 13 2019, In: Phytobiomes Journal.

Research output: Contribution to journalArticlepeer-review

NaCl-induced CsRCI2E and CsRCI2F interact with aquaporin CsPIP2;1 to reduce water transport in Camelina sativa L.

Kim, H. S., Park, W., Lim, H. G., Eom, S., Lee, J. H., Carlson, J. E. & Ahn, S. J., May 21 2019, In: Biochemical and Biophysical Research Communications. 513, 1, p. 213-218 6 p.

Research output: Contribution to journalArticlepeer-review