Research Summary
Biological chemistry of RNA, characterization of RNA catalysis and folding, characterization of the RNA-dependent regulation of human viral response and RNA folding in plants as a response to environmental stress.
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Research Keywords
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Recent Publications
Regulatory Mechanisms through RNA Conformational Switching and Dynamics
Bevilacqua, P. C. & Tolbert, B. S., Sep 30 2022, In: Journal of Molecular Biology. 434, 18, 167794.Research output: Contribution to journal › Editorial › peer-review
RNA multimerization as an organizing force for liquid–liquid phase separation
Bevilacqua, P. C., Williams, A. M., Chou, H. L. & Assmann, S. M., Jan 2022, In: RNA. 28, 1, p. 16-26 11 p.Research output: Contribution to journal › Article › peer-review
Phase-specific RNA accumulation and duplex thermodynamics in multiphase coacervate models for membraneless organelles
Choi, S., Meyer, M. C. O., Bevilacqua, P. C. & Keating, C. D., 2022, (Accepted/In press) In: Nature Chemistry.Research output: Contribution to journal › Article › peer-review
Experimental demonstration and pan-structurome prediction of climate-associated riboSNitches in Arabidopsis
Ferrero-Serrano, Á., Sylvia, M. M., Forstmeier, P. C., Olson, A. J., Ware, D., Bevilacqua, P. C. & Assmann, S. M., Dec 2022, In: Genome biology. 23, 1, 101.Research output: Contribution to journal › Article › peer-review
Upstream Flanking Sequence Assists Folding of an RNA Thermometer
Jolley, E. A., Bormes, K. M. & Bevilacqua, P. C., Sep 30 2022, In: Journal of Molecular Biology. 434, 18, 167786.Research output: Contribution to journal › Article › peer-review
Biological solution conditions and flanking sequence modulate LLPS of RNA G-quadruplex structures
Williams, A. M., Dickson, T. M., Lagoa-Miguel, C. A. & Bevilacqua, P. C., Sep 1 2022, In: RNA (New York, N.Y.). 28, 9, p. 1197-1209 13 p.Research output: Contribution to journal › Article › peer-review
Genome-wide analysis of the in vivo tRNA structurome reveals RNA structural and modification dynamics under heat stress
Yamagami, R., Sieg, J. P., Assmann, S. M. & Bevilacqua, P. C., Jun 21 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 25, e2201237119.Research output: Contribution to journal › Article › peer-review
RNA sequence and structure control assembly and function of RNA condensates
Poudyal, R. R., Sieg, J. P., Portz, B., Keating, C. D. & Bevilacqua, P. C., Dec 1 2021, In: RNA (New York, N.Y.). 27, 12, p. 1589-1601 13 p.Research output: Contribution to journal › Article › peer-review
Investigation of the pKa of the nucleophilic O2' of the hairpin ribozyme
Veenis, A. J., Li, P., Soudackov, A. V., Hammes-Schiffer, S. & Bevilacqua, P. C., Nov 4 2021, In: Journal of Physical Chemistry B. 125, 43, p. 11869-11883 15 p.Research output: Contribution to journal › Article › peer-review
Long Tracts of Guanines Drive Aggregation of RNA G-Quadruplexes in the Presence of Spermine
Williams, A. M., Poudyal, R. R. & Bevilacqua, P. C., Sep 14 2021, In: Biochemistry. 60, 36, p. 2715-2726 12 p.Research output: Contribution to journal › Article › peer-review
Functional Roles of Chelated Magnesium Ions in RNA Folding and Function
Yamagami, R., Sieg, J. P. & Bevilacqua, P. C., Aug 10 2021, In: Biochemistry. 60, 31, p. 2374-2386 13 p.Research output: Contribution to journal › Review article › peer-review
Efficient construction of long DNA duplexes with internal non-Watson-Crick motifs and modifications
Zheng, X. & Bevilacqua, P. C., Jan 1 2021, In: Nucleic acids research. 29, 2, e6.Research output: Contribution to journal › Article › peer-review
Prebiotically-relevant low polyion multivalency can improve functionality of membraneless compartments
Cakmak, F. P., Choi, S., Meyer, M. C. O., Bevilacqua, P. C. & Keating, C. D., Dec 2020, In: Nature communications. 11, 1, 5949.Research output: Contribution to journal › Article › peer-review
Csra-mediated translational activation of ymda expression in escherichia coli
Renda, A., Poly, S., Lai, Y. J., Pannuri, A., Yakhnin, H., Potts, A. H., Bevilacqua, P. C., Romeo, T. & Babitzke, P., Sep 1 2020, In: mBio. 11, 5, p. 1-12 12 p., e00849-20.Research output: Contribution to journal › Article › peer-review
Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis
Ritchey, L. E., Tack, D. C., Yakhnin, H., Jolley, E. A., Assmann, S. M., Bevilacqua, P. C. & Babitzke, P., Oct 2020, In: RNA. 26, 10, p. 1431-1447 17 p.Research output: Contribution to journal › Article › peer-review