Justin Silverman

Affiliate Researcher
Titles and Affiliations
Assistant Professor in Data Sciences, College of Information Sciences and Technology
Assistant Professor, Department of Medicine

In the News

Research Keywords

Recent Publications

Impacts of the COVID-19 pandemic on pharmaceuticals in wastewater treated for beneficial reuse: Two case studies in central Pennsylvania

Hayden, K. R., Jones, M., Elkin, K. R., Shreve, M. J., Clees, W. I., Clark, S., Mashtare, M. L., Veith, T. L., Elliott, H. A., Watson, J. E., Silverman, J., Richard, T. L., Read, A. F. & Preisendanz, H. E., Sep 1 2022, In: Journal of Environmental Quality. 51, 5, p. 1066-1082 17 p.

Research output: Contribution to journalArticlepeer-review

Microbiota responses to different prebiotics are conserved within individuals and associated with habitual fiber intake

Holmes, Z. C., Villa, M. M., Durand, H. K., Jiang, S., Dallow, E. P., Petrone, B. L., Silverman, J. D., Lin, P. H. & David, L. A., Dec 2022, In: Microbiome. 10, 1, 114.

Research output: Contribution to journalArticlepeer-review

Multiomics implicate gut microbiota in altered lipid and energy metabolism in Parkinson’s disease

Pereira, P. A. B., Trivedi, D. K., Silverman, J., Duru, I. C., Paulin, L., Auvinen, P. & Scheperjans, F., Dec 2022, In: npj Parkinson's Disease. 8, 1, 39.

Research output: Contribution to journalArticlepeer-review

Bayesian Multinomial Logistic Normal Models through Marginally Latent Matrix-T Processes

Silverman, J. D., Roche, K., Holmes, Z. C., David, L. A. & Mukherjee, S., 2022, In: Journal of Machine Learning Research. 23

Research output: Contribution to journalArticlepeer-review

Metformin modulates the gut microbiome in broiler breeder hens

Van Syoc, E., Weaver, E., Rogers, C. J., Silverman, J., Ramachandran, R. & Ganda, E., Sep 14 2022, In: Frontiers in Physiology. 13, 1000144.

Research output: Contribution to journalArticlepeer-review

DNA extraction and host depletion methods significantly impact and potentially bias bacterial detection in a biological fluid

Ganda, E., Beck, K. L., Haiminen, N., Silverman, J. D., Kawas, B., Cronk, B. D., Anderson, R. R., Goodman, L. B. & Wiedmann, M., Jun 2021, In: mSystems. 6, 3, e00619-21.

Research output: Contribution to journalArticlepeer-review

The Pediatric Obesity Microbiome and Metabolism Study (POMMS): Methods, Baseline Data, and Early Insights

McCann, J. R., Bihlmeyer, N. A., Roche, K., Catherine, C., Jawahar, J., Kwee, L. C., Younge, N. E., Silverman, J., Ilkayeva, O., Sarria, C., Zizzi, A., Wootton, J., Poppe, L., Anderson, P., Arlotto, M., Wei, Z., Granek, J. A., Valdivia, R. H., David, L. A., Dressman, H. K., & 5 othersNewgard, C. B., Shah, S. H., Seed, P. C., Rawls, J. F. & Armstrong, S. C., Mar 2021, In: Obesity. 29, 3, p. 569-578 10 p.

Research output: Contribution to journalArticlepeer-review

Measuring and mitigating PCR bias in microbiota datasets

Silverman, J. D., Bloom, R. J., Jiang, S., Durand, H. K., Dallow, E., Mukherjee, S. & David, L. A., Jul 2021, In: PLoS computational biology. 17, 7, e1009113.

Research output: Contribution to journalArticlepeer-review

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England

CMMID COVID-19 Working Group & COVID-19 Genomics UK (COG-UK) Consortium, Apr 9 2021, In: Science. 372, 6538, eabg3055.

Research output: Contribution to journalArticlepeer-review

Allogenic Fecal Microbiota Transplantation in Patients with Nonalcoholic Fatty Liver Disease Improves Abnormal Small Intestinal Permeability: A Randomized Control Trial

Craven, L., Rahman, A., Nair Parvathy, S., Beaton, M., Silverman, J., Qumosani, K., Hramiak, I., Hegele, R., Joy, T., Meddings, J., Urquhart, B., Harvie, R., McKenzie, C., Summers, K., Reid, G., Burton, J. P. & Silverman, M., Jul 1 2020, In: American Journal of Gastroenterology. 115, 7, p. 1055-1065 11 p.

Research output: Contribution to journalArticlepeer-review

Short-chain fatty acid production by gut microbiota from children with obesity differs according to prebiotic choice and bacterial community composition

Holmes, Z. C., Silverman, J. D., Dressman, H. K., Wei, Z., Dallow, E. P., Armstrong, S. C., Seed, P. C., Rawls, J. F. & David, L. A., Jul 1 2020, In: mBio. 11, 4, p. 1-15 15 p., e00914-20.

Research output: Contribution to journalArticlepeer-review

Naught all zeros in sequence count data are the same

Silverman, J. D., Roche, K., Mukherjee, S. & David, L. A., Jan 2020, In: Computational and Structural Biotechnology Journal. 18, p. 2789-2798 10 p.

Research output: Contribution to journalReview articlepeer-review

Using influenza surveillance networks to estimate state-specific prevalence of SARS-CoV-2 in the United States

Silverman, J. D., Hupert, N. & Washburne, A. D., Jul 29 2020, In: Science Translational Medicine. 12, 554, eabc1126.

Research output: Contribution to journalArticlepeer-review

Interindividual variation in dietary carbohydrate metabolism by gut bacteria revealed with droplet microfluidic culture

Villa, M. M., Bloom, R. J., Silverman, J. D., Durand, H. K., Jiang, S., Wu, A., Dallow, E. P., Huang, S., You, L. & David, L. A., Jun 2020, In: mSystems. 5, 3, 0086419.

Research output: Contribution to journalArticlepeer-review

Establishing microbial composition measurement standards with reference frames

Morton, J. T., Marotz, C., Washburne, A., Silverman, J., Zaramela, L. S., Edlund, A., Zengler, K. & Knight, R., Dec 1 2019, In: Nature communications. 10, 1, 2719.

Research output: Contribution to journalArticlepeer-review