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Assistant Professor, College of Information Sciences and Technology
Assistant Professor, Department of Medicine
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Recent Publications
Explicit Scale Simulation for analysis of RNA-sequencing count data with ALDEx2
Gloor, G. B., Nixon, M. P. & Silverman, J. D., Sep 1 2025, In: NAR Genomics and Bioinformatics. 7, 3, lqaf108.Research output: Contribution to journal › Article › peer-review
Wastewater surveillance of SARS-CoV-2 and influenza in a dynamic university community: understanding how wastewater measurements correspond to reported cases
Jones, M. J., Ibrahim, R., Clark, S., Brooks, Y. M., Preisendanz, H. E., Richard, T. L., Read, A. F., Robinson, C. J., Noorali, S., Shreve, M. J., Dennington, N. L., Silverman, J. D., Van Oost, C. & McGraw, E. A., Oct 20 2025, In: Science of the Total Environment. 1000, 180377.Research output: Contribution to journal › Article › peer-review
Infection risk of rituximab monotherapy versus combination therapy with rituximab and mycophenolic acid in systemic sclerosis: A retrospective cohort study
Kang, J. B., Nabel Smith, K., Meara, E. M., Cho, M. J., Silverman, J. D., LaChance, A. H. & Smith, J. S., May 2025, In: Journal of the American Academy of Dermatology. 92, 5, p. 1151-1153 3 p.Research output: Contribution to journal › Article › peer-review
Corrigendum: Use of intrauterine dextrose as an alternative to systemic antibiotics for treatment of clinical metritis in dairy cattle: a microbiome perspective (Frontiers in Veterinary Science, (2024), 11, (1478288), 10.3389/fvets.2024.1478288)
Lection, J., Van Syoc, E., Miles, A., Hamilton, J., Martinez, M., Bas, S., Silverman, J., Barragan, A. & Ganda, E., 2025, In: Frontiers in Veterinary Science. 12, 1596455.Research output: Contribution to journal › Comment/debate › peer-review
Brain-wide connectivity and novelty response of the dorsal endopiriform nucleus in mice
Manjila, S. B., Son, S., Parmaksiz, D., Kline, H., Betty, R., Wu, Y. T., Pi, H. J., Shin, D., Liwang, J. K., Kronman, F. N., Bjerke, I. E., McGovern, K., Silverman, J., Paul, A. & Kim, Y., Jul 22 2025, In: Cell Reports. 44, 7, 115827.Research output: Contribution to journal › Article › peer-review
Replacing normalizations with interval assumptions enhances differential expression and differential abundance analyses
McGovern, K. C. & Silverman, J. D., Dec 2025, In: BMC bioinformatics. 26, 1, 164.Research output: Contribution to journal › Article › peer-review
Incorporating scale uncertainty in microbiome and gene expression analysis as an extension of normalization
Nixon, M. P., Gloor, G. B. & Silverman, J. D., Dec 2025, In: Genome biology. 26, 1, 139.Research output: Contribution to journal › Article › peer-review
Scalable Inference for Bayesian Multinomial Logistic-Normal Dynamic Linear Models
Saxena, M., Chen, T. & Silverman, J. D., 2025, In: Proceedings of Machine Learning Research. 258, p. 442-450 9 p.Research output: Contribution to journal › Conference article › peer-review
Investigating antibiotic free feed additives for growth promotion in poultry: effects on performance and microbiota
Fonseca, A., Kenney, S., Van Syoc, E., Bierly, S., Dini-Andreote, F., Silverman, J., Boney, J. & Ganda, E., May 2024, In: Poultry science. 103, 5, 103604.Research output: Contribution to journal › Article › peer-review
Use of intrauterine dextrose as an alternative to systemic antibiotics for treatment of clinical metritis in dairy cattle: a microbiome perspective
Lection, J., Van Syoc, E., Miles, A., Hamilton, J., Martinez, M., Bas, S., Silverman, J., Barragan, A. & Ganda, E., 2024, In: Frontiers in Veterinary Science. 11, 1478288.Research output: Contribution to journal › Article › peer-review
From pre-test and post-test probabilities to medical decision making
Nixon, M. P., Momotaz, F., Smith, C., Smith, J. S., Sendak, M., Polage, C. & Silverman, J. D., Dec 2024, In: BMC medical informatics and decision making. 24, 1, 210.Research output: Contribution to journal › Article › peer-review
Changes in the type 2 diabetes gut mycobiome associate with metformin treatment across populations
Van Syoc, E., Nixon, M. P., Silverman, J. D., Luo, Y., Gonzalez, F. J., Elbere, I., Klovins, J., Patterson, A. D., Rogers, C. J. & Ganda, E., Jun 2024, In: mBio. 15, 6Research output: Contribution to journal › Article › peer-review
Phosphorylation barcodes direct biased chemokine signaling at CXCR3
Eiger, D. S., Smith, J. S., Shi, T., Stepniewski, T. M., Tsai, C. F., Honeycutt, C., Boldizsar, N., Gardner, J., Nicora, C. D., Moghieb, A. M., Kawakami, K., Choi, I., Hicks, C., Zheng, K., Warman, A., Alagesan, P., Knape, N. M., Huang, O., Silverman, J. D. & Smith, R. D. & 4 others, , Apr 20 2023, In: Cell Chemical Biology. 30, 4, p. 362-382.e8Research output: Contribution to journal › Article › peer-review
Ancient dental calculus reveals oral microbiome shifts associated with lifestyle and disease in Great Britain
Gancz, A. S., Farrer, A. G., Nixon, M. P., Wright, S., Arriola, L., Adler, C., Davenport, E. R., Gully, N., Cooper, A., Britton, K., Dobney, K., Silverman, J. D. & Weyrich, L. S., Dec 2023, In: Nature Microbiology. 8, 12, p. 2315-2325 11 p.Research output: Contribution to journal › Article › peer-review
Race, employment, and the pandemic: An exploration of covariate explanations of COVID-19 case fatality rate variance
Griffin, C., Block, R., Silverman, J. D., Croad, J. & Lennon, R. P., Feb 2023, In: PloS one. 18, 2 February, e0274470.Research output: Contribution to journal › Article › peer-review