Hong Ma

Affiliate Researcher

Our lab studies mechanisms regulating plant reproductive development under favorable or stressful conditions. In particular, we are interested in learning about genes that are important for promoting plant development under drought and high temperatures since both stresses are frequently encountered by crops and wild plants and impact both agricultural yields and ecosystem health. We use molecular genetic analyses to probe gene functions and employ a variety of other approaches, including comparative genomics, transcriptomics, and proteomics, as well as cell biological examination of protein location to identify and characterize gene functions. We further conduct molecular evolutionary analyses of major plant families with crops such as maize, rice, wheat, soybean, tomato, potato, canola, cucumber, and apple, including evolutionary processes at the levels of the organism, morphology, physiology, genome, and gene family. These large-scale investigations are aimed at understanding shared and specialized genes and regulatory pathways of plant development and responses to environmental changes.

In the News

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Recent Publications

Phylogenomic profile of exon-intron organization across angiosperms, their relationships with protein domains, and functional implications

Zhang, T., Zhang, L., Ma, H. & Wang, J., Dec 2026, In: Nature communications. 17, 1, 106.

Research output: Contribution to journalArticlepeer-review

Pan-genome analysis reveals the evolution and diversity of Malus

Li, W., Chu, C., Zhang, T., Sun, H., Wang, S., Liu, Z., Wang, Z., Li, H., Li, Y., Zhang, X., Geng, Z., Wang, Y., Li, Y., Zhang, H., Fan, W., Wang, Y., Xu, X., Cheng, L., Zhang, D. & Xiong, Y. & 7 others, Li, H., Zhou, B., Guan, Q., Deng, C. H., Han, Y., Ma, H. & Han, Z., May 2025, In: Nature Genetics. 57, 5, p. 1274-1286 13 p., 249.

Research output: Contribution to journalArticlepeer-review

Rethinking the role of colour in avian fruit choices and foraging mechanisms

Messeder, J. V. S., Vizzachero, B. S., Morales, J. M., Ma, H. & Carlo, T. A., Nov 2025, In: Functional Ecology. 39, 11, p. 3325-3338 14 p.

Research output: Contribution to journalArticlepeer-review

CLE19 suppresses brassinosteroid signaling output via the BSL-BIN2 module to maintain BES1 activity and pollen exine patterning in Arabidopsis

Wang, S., Zhang, S., Yu, Y., Wang, J., Wang, J., Li, M., Lu, J., Ye, J., Li, H., Liu, Y., Zhao, Y., Song, W., Dong, J., Li, J., Liu, C., Ma, H. & Chang, F., Dec 2025, In: Journal of Integrative Plant Biology. 67, 12, p. 3216-3230 15 p.

Research output: Contribution to journalArticlepeer-review

Clonal longevity and the enigmatic flowering of woody bamboos are associated with rates of protein evolution

Wang, X., Zeng, Z. H., Ma, P. F., Liu, Y. L., Sun, H. Y., Wang, H., Ma, H., Li, D. Z. & Zhou, W., Nov 2025, In: Journal of Integrative Plant Biology. 67, 11, p. 2945-2963 19 p.

Research output: Contribution to journalArticlepeer-review

Unraveling evolutionary pathways: allopolyploidization and introgression in polyploid Prunus (Rosaceae)

Xie, S. Y., Lin, X. H., Wang, J. R., Ma, D. K., Su, N., Xu, C., Zhang, Y., Ma, H., Li, P., Chen, D. Y., Zhong, X., Ge, B. J., Hodel, R. G. J., Zhao, L. & Liu, B. B., Jul 2025, In: Plant Journal. 123, 1, e70320.

Research output: Contribution to journalArticlepeer-review

ANAPHASE-PROMOTING COMPLEX/CYCLOSOME coactivators maintain AURORA 1 kinase homeostasis during meiotic chromosome segregation

Xu, J., Zhou, L., Chen, K., Huang, R., Niu, B., Ye, J., Ma, H., Copenhaver, G. P. & Wang, Y., Jun 1 2025, In: Plant Cell. 37, 6, koaf089.

Research output: Contribution to journalArticlepeer-review

Genome duplications, genomic conflict, and rapid phenotypic evolution characterize the Cretaceous radiation of Fagales

Yang, Y. Y., Stull, G. W., Qu, X. J., Deng, M., Zhao, L., Hu, Y., Wang, Z. H., Ma, H., Li, D. Z., Smith, S. A. & Yi, T. S., Nov 2025, In: Journal of Integrative Plant Biology. 67, 11, p. 2929-2944 16 p.

Research output: Contribution to journalArticlepeer-review

Nuclear Phylogenomics of Angiosperms and Evolutionary Implications

Zhang, L., Huang, C. H., Zhang, G., Zhang, C., Zhao, Y., Huang, J., Guo, J., Cheng, L., Zhang, T. & Ma, H., Feb 2025, In: Diversity. 17, 2, 136.

Research output: Contribution to journalReview articlepeer-review

Nuclear phylogenomics provide evidence to clarify key morphological evolution and whole-genome duplication across rosids

Zhao, Y., Yu, D., Kuo, W., Huang, J., Guo, J., Sun, M., Hu, Y., Soltis, D. E., Soltis, P. S., Ma, H. & Huang, C. H., Oct 2025, In: Journal of Integrative Plant Biology. 67, 10, p. 2704-2730 27 p.

Research output: Contribution to journalArticlepeer-review

A nuclear phylogenomic tree of grasses (Poaceae) recovers current classification despite gene tree incongruence

Grass Phylogeny Working Group III, Jan 2025, In: New Phytologist. 245, 2, p. 818-834 17 p.

Research output: Contribution to journalArticlepeer-review

Revealing the role of CCoAOMT1: fine-tuning bHLH transcription factors for optimal anther development

Lai, Z., Wang, J., Fu, Y., Wang, M., Ma, H., Peng, S. & Chang, F., Mar 2024, In: Science China Life Sciences. 67, 3, p. 565-578 14 p.

Research output: Contribution to journalArticlepeer-review

Developmentally dependent reprogramming of the Arabidopsis floral transcriptome under sufficient and limited water availability

Ma, X., Wang, J., Su, Z. & Ma, H., Dec 2024, In: BMC plant biology. 24, 1, 273.

Research output: Contribution to journalArticlepeer-review

A highly resolved nuclear phylogeny uncovers strong phylogenetic conservatism and correlated evolution of fruit color and size in Solanum L.

Messeder, J. V. S., Carlo, T. A., Zhang, G., Tovar, J. D., Arana, C., Huang, J., Huang, C. H. & Ma, H., Jul 2024, In: New Phytologist. 243, 2, p. 765-780 16 p.

Research output: Contribution to journalArticlepeer-review

Regulation of micro- and small-exon retention and other splicing processes by GRP20 for flower development

Wang, J., Ma, X., Hu, Y., Feng, G., Guo, C., Zhang, X. & Ma, H., Jan 2024, In: Nature Plants. 10, 1, p. 66-85 20 p.

Research output: Contribution to journalArticlepeer-review