Our lab studies mechanisms regulating plant reproductive development under favorable or stressful conditions. In particular, we are interested in learning about genes that are important for promoting plant development under drought and high temperatures since both stresses are frequently encountered by crops and wild plants and impact both agricultural yields and ecosystem health. We use molecular genetic analyses to probe gene functions and employ a variety of other approaches, including comparative genomics, transcriptomics, and proteomics, as well as cell biological examination of protein location to identify and characterize gene functions. We further conduct molecular evolutionary analyses of major plant families with crops such as maize, rice, wheat, soybean, tomato, potato, canola, cucumber, and apple, including evolutionary processes at the levels of the organism, morphology, physiology, genome, and gene family. These large-scale investigations are aimed at understanding shared and specialized genes and regulatory pathways of plant development and responses to environmental changes.
In the News
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Recent Publications
Phylogenomic profile of exon-intron organization across angiosperms, their relationships with protein domains, and functional implications
Zhang, T., Zhang, L., Ma, H. & Wang, J., Dec 2026, In: Nature communications. 17, 1, 106.Research output: Contribution to journal › Article › peer-review
Pan-genome analysis reveals the evolution and diversity of Malus
Li, W., Chu, C., Zhang, T., Sun, H., Wang, S., Liu, Z., Wang, Z., Li, H., Li, Y., Zhang, X., Geng, Z., Wang, Y., Li, Y., Zhang, H., Fan, W., Wang, Y., Xu, X., Cheng, L., Zhang, D. & Xiong, Y. & 7 others, , May 2025, In: Nature Genetics. 57, 5, p. 1274-1286 13 p., 249.Research output: Contribution to journal › Article › peer-review
Rethinking the role of colour in avian fruit choices and foraging mechanisms
Messeder, J. V. S., Vizzachero, B. S., Morales, J. M., Ma, H. & Carlo, T. A., Nov 2025, In: Functional Ecology. 39, 11, p. 3325-3338 14 p.Research output: Contribution to journal › Article › peer-review
CLE19 suppresses brassinosteroid signaling output via the BSL-BIN2 module to maintain BES1 activity and pollen exine patterning in Arabidopsis
Wang, S., Zhang, S., Yu, Y., Wang, J., Wang, J., Li, M., Lu, J., Ye, J., Li, H., Liu, Y., Zhao, Y., Song, W., Dong, J., Li, J., Liu, C., Ma, H. & Chang, F., Dec 2025, In: Journal of Integrative Plant Biology. 67, 12, p. 3216-3230 15 p.Research output: Contribution to journal › Article › peer-review
Clonal longevity and the enigmatic flowering of woody bamboos are associated with rates of protein evolution
Wang, X., Zeng, Z. H., Ma, P. F., Liu, Y. L., Sun, H. Y., Wang, H., Ma, H., Li, D. Z. & Zhou, W., Nov 2025, In: Journal of Integrative Plant Biology. 67, 11, p. 2945-2963 19 p.Research output: Contribution to journal › Article › peer-review
Unraveling evolutionary pathways: allopolyploidization and introgression in polyploid Prunus (Rosaceae)
Xie, S. Y., Lin, X. H., Wang, J. R., Ma, D. K., Su, N., Xu, C., Zhang, Y., Ma, H., Li, P., Chen, D. Y., Zhong, X., Ge, B. J., Hodel, R. G. J., Zhao, L. & Liu, B. B., Jul 2025, In: Plant Journal. 123, 1, e70320.Research output: Contribution to journal › Article › peer-review
ANAPHASE-PROMOTING COMPLEX/CYCLOSOME coactivators maintain AURORA 1 kinase homeostasis during meiotic chromosome segregation
Xu, J., Zhou, L., Chen, K., Huang, R., Niu, B., Ye, J., Ma, H., Copenhaver, G. P. & Wang, Y., Jun 1 2025, In: Plant Cell. 37, 6, koaf089.Research output: Contribution to journal › Article › peer-review
Genome duplications, genomic conflict, and rapid phenotypic evolution characterize the Cretaceous radiation of Fagales
Yang, Y. Y., Stull, G. W., Qu, X. J., Deng, M., Zhao, L., Hu, Y., Wang, Z. H., Ma, H., Li, D. Z., Smith, S. A. & Yi, T. S., Nov 2025, In: Journal of Integrative Plant Biology. 67, 11, p. 2929-2944 16 p.Research output: Contribution to journal › Article › peer-review
Nuclear Phylogenomics of Angiosperms and Evolutionary Implications
Zhang, L., Huang, C. H., Zhang, G., Zhang, C., Zhao, Y., Huang, J., Guo, J., Cheng, L., Zhang, T. & Ma, H., Feb 2025, In: Diversity. 17, 2, 136.Research output: Contribution to journal › Review article › peer-review
Nuclear phylogenomics provide evidence to clarify key morphological evolution and whole-genome duplication across rosids
Zhao, Y., Yu, D., Kuo, W., Huang, J., Guo, J., Sun, M., Hu, Y., Soltis, D. E., Soltis, P. S., Ma, H. & Huang, C. H., Oct 2025, In: Journal of Integrative Plant Biology. 67, 10, p. 2704-2730 27 p.Research output: Contribution to journal › Article › peer-review
A nuclear phylogenomic tree of grasses (Poaceae) recovers current classification despite gene tree incongruence
Grass Phylogeny Working Group III, Jan 2025, In: New Phytologist. 245, 2, p. 818-834 17 p.Research output: Contribution to journal › Article › peer-review
Revealing the role of CCoAOMT1: fine-tuning bHLH transcription factors for optimal anther development
Lai, Z., Wang, J., Fu, Y., Wang, M., Ma, H., Peng, S. & Chang, F., Mar 2024, In: Science China Life Sciences. 67, 3, p. 565-578 14 p.Research output: Contribution to journal › Article › peer-review
Developmentally dependent reprogramming of the Arabidopsis floral transcriptome under sufficient and limited water availability
Ma, X., Wang, J., Su, Z. & Ma, H., Dec 2024, In: BMC plant biology. 24, 1, 273.Research output: Contribution to journal › Article › peer-review
A highly resolved nuclear phylogeny uncovers strong phylogenetic conservatism and correlated evolution of fruit color and size in Solanum L.
Messeder, J. V. S., Carlo, T. A., Zhang, G., Tovar, J. D., Arana, C., Huang, J., Huang, C. H. & Ma, H., Jul 2024, In: New Phytologist. 243, 2, p. 765-780 16 p.Research output: Contribution to journal › Article › peer-review
Regulation of micro- and small-exon retention and other splicing processes by GRP20 for flower development
Wang, J., Ma, X., Hu, Y., Feng, G., Guo, C., Zhang, X. & Ma, H., Jan 2024, In: Nature Plants. 10, 1, p. 66-85 20 p.Research output: Contribution to journal › Article › peer-review
