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Recent Publications
A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis
Huang, W., Zhang, L., Columbus, J. T., Hu, Y., Zhao, Y., Tang, L., Guo, Z., Chen, W., McKain, M., Bartlett, M., Huang, C. H., Li, D. Z., Ge, S. & Ma, H., Apr 4 2022, In: Molecular plant. 15, 4, p. 755-777 23 p.Research output: Contribution to journal › Article › peer-review
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere
Liu, B. B., Ren, C., Kwak, M., Hodel, R. G. J., Xu, C., He, J., Zhou, W. B., Huang, C. H., Ma, H., Qian, G. Z., Hong, D. Y. & Wen, J., May 2022, In: Journal of Integrative Plant Biology. 64, 5, p. 1020-1043 24 p.Research output: Contribution to journal › Article › peer-review
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae)
Morales-Briones, D. F., Gehrke, B., Huang, C. H., Liston, A., Ma, H., Marx, H. E., Tank, D. C. & Yang, Y., Jan 2022, In: Systematic Biology. 71, 1, p. 190-207 18 p.Research output: Contribution to journal › Article › peer-review
DNA polymerase epsilon binds histone H3.1-H4 and recruits MORC1 to mediate meiotic heterochromatin condensation
Wang, C., Huang, J., Li, Y., Zhang, J., He, C., Li, T., Jiang, D., Dong, A., Ma, H., Copenhaver, G. P. & Wang, Y., Oct 25 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 43, e2213540119.Research output: Contribution to journal › Article › peer-review
Preferential retention of the slowly evolving gene in pairs of duplicates in angiosperm genomes
Wang, L. B., Ma, H. & Lin, J., Jul 2022, In: Journal of Systematics and Evolution. 60, 4, p. 848-858 11 p.Research output: Contribution to journal › Article › peer-review
Phylotranscriptomics Resolves the Phylogeny of Pooideae and Uncovers Factors for Their Adaptive Evolution
Zhang, L., Zhu, X., Zhao, Y., Guo, J., Zhang, T., Huang, W., Huang, J., Hu, Y., Huang, C. H. & Ma, H., Feb 1 2022, In: Molecular biology and evolution. 39, 2, msac026.Research output: Contribution to journal › Article › peer-review
Fanconi anemia ortholog FANCM regulates meiotic crossover distribution in plants
Li, X., Yu, M., Bolaños-Villegas, P., Zhang, J., Ni, D., Ma, H. & Wang, Y., May 2021, In: Plant physiology. 186, 1, p. 344-360 17 p.Research output: Contribution to journal › Article › peer-review
Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms
Stull, G. W., Qu, X. J., Parins-Fukuchi, C., Yang, Y. Y., Yang, J. B., Yang, Z. Y., Hu, Y., Ma, H., Soltis, P. S., Soltis, D. E., Li, D. Z., Smith, S. A. & Yi, T. S., Aug 2021, In: Nature Plants. 7, 8, p. 1015-1025 11 p.Research output: Contribution to journal › Article › peer-review
Evolution of the Brassicaceae-specific MS5-Like family and neofunctionalization of the novel MALE STERILITY 5 gene essential for male fertility in Brassica napus
Zeng, X., Li, H., Li, K., Yuan, R., Zhao, S., Li, J., Luo, J., Li, X., Ma, H., Wu, G. & Yan, X., Feb 2021, In: New Phytologist. 229, 4, p. 2339-2356 18 p.Research output: Contribution to journal › Article › peer-review
Phylotranscriptomic insights into Asteraceae diversity, polyploidy, and morphological innovation
Zhang, C., Huang, C. H., Liu, M., Hu, Y., Panero, J. L., Luebert, F., Gao, T. & Ma, H., Jul 2021, In: Journal of Integrative Plant Biology. 63, 7, p. 1273-1293 21 p.Research output: Contribution to journal › Article › peer-review
Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae
Zhao, Y., Zhang, R., Jiang, K. W., Qi, J., Hu, Y., Guo, J., Zhu, R., Zhang, T., Egan, A. N., Yi, T. S., Huang, C. H. & Ma, H., May 3 2021, In: Molecular plant. 14, 5, p. 748-773 26 p.Research output: Contribution to journal › Article › peer-review
Analyses of functional conservation and divergence reveal requirement of bHLH010/089/091 for pollen development at elevated temperature in Arabidopsis
Fu, Y., Li, M., Zhang, S., Yang, Q., Zhu, E., You, C., Qi, J., Ma, H. & Chang, F., Aug 2020, In: Journal of Genetics and Genomics. 47, 8, p. 477-492 16 p.Research output: Contribution to journal › Article › peer-review
Phylotranscriptomics in Cucurbitaceae Reveal Multiple Whole-Genome Duplications and Key Morphological and Molecular Innovations
Guo, J., Xu, W., Hu, Y., Huang, J., Zhao, Y., Zhang, L., Huang, C. H. & Ma, H., Aug 3 2020, In: Molecular plant. 13, 8, p. 1117-1133 17 p.Research output: Contribution to journal › Article › peer-review
Conservation and divergence in the meiocyte srnaomes of arabidopsis, soybean, and cucumber
Huang, J., Wang, C., Li, X., Fang, X., Huang, N., Wang, Y., Ma, H., Wang, Y. & Copenhaver, G. P., Jan 2020, In: Plant physiology. 182, 1, p. 301-307 7 p.Research output: Contribution to journal › Article › peer-review
Recurrent genome duplication events likely contributed to both the ancient and recent rise of ferns
Huang, C. H., Qi, X., Chen, D., Qi, J. & Ma, H., Apr 1 2020, In: Journal of Integrative Plant Biology. 62, 4, p. 433-455 23 p.Research output: Contribution to journal › Article › peer-review