Estelle Couradeau

Affiliate Researcher
Titles and Affiliations
Assistant Professor, Ecosystem Science and Management

Estelle Couradeau completed her Ph.D. in geomicrobiology at the University of Paris-Diderot (France), where she worked on the intricate relationship between microbes and their mineral substrate. A topic that she further explored as a postdoc at Arizona State University. During her time in Arizona, she started working on soils and applied her analytical skills to arid land soils built by microbes. She became passionate about soils and their potential to be a lifeline for current global challenges. She further pursued that topic as a postdoc at the Joint Genome Institute (LBNL) and worked on contaminated soils while completing her training in microbiomes characterization, including omics techniques. She joined Penn State in early 2020 as an assistant professor in the Ecosystem Science and Management department. Her group focuses on the study of soil microbiomes, trying to understand which microbes are active and how their metabolism might be affected by the rapidly changing environmental conditions.

In the News

Research Keywords

Projects

Recent Publications

Naïve Bayes Classifiers and accompanying dataset for Pseudomonas syringae isolate characterization

Fautt, C., Couradeau, E. & Hockett, K. L., Dec 2024, In: Scientific Data. 11, 1, 178.

Research output: Contribution to journalArticlepeer-review

Evaluation of the taxonomic accuracy and pathogenicity prediction power of 16 primer sets amplifying single copy marker genes in the Pseudomonas syringae species complex

Fautt, C., Hockett, K. L. & Couradeau, E., Aug 2023, In: Molecular plant pathology. 24, 8, p. 989-998 10 p.

Research output: Contribution to journalArticlepeer-review

BONCAT-FACS-Seq reveals the active fraction of a biocrust community undergoing a wet-up event

Trexler, R. V., Van Goethem, M. W., Goudeau, D., Nath, N., Malmstrom, R. R., Northen, T. R. & Couradeau, E., 2023, In: Frontiers in Microbiology. 14, 1176751.

Research output: Contribution to journalArticlepeer-review

Microbial carbon, sulfur, iron, and nitrogen cycling linked to the potential remediation of a meromictic acidic pit lake

Ayala-Muñoz, D., Macalady, J. L., Sánchez-España, J., Falagán, C., Couradeau, E. & Burgos, W. D., Dec 2022, In: ISME Journal. 16, 12, p. 2666-2679 14 p.

Research output: Contribution to journalArticlepeer-review

Novel Microorganisms Contribute to Biosulfidogenesis in the Deep Layer of an Acidic Pit Lake

Ayala-Muñoz, D., Burgos, W. D., Sánchez-España, J., Falagán, C., Couradeau, E. & Macalady, J. L., Jul 13 2022, In: Frontiers in Bioengineering and Biotechnology. 10, 867321.

Research output: Contribution to journalArticlepeer-review

Bypass and hyperbole in soil science: A perspective from the next generation of soil scientists

Portell, X., Sauzet, O., Balseiro-Romero, M., Benard, P., Cardinael, R., Couradeau, E., Danra, D. D., Evans, D. L., Fry, E. L., Hammer, E. C., Mamba, D., Merino-Martín, L., Mueller, C. W., Paradelo, M., Rees, F., M. W. Rossi, L., Schmidt, H., Schnee, L. S., Védère, C. & Vidal, A., Jan 2021, In: European Journal of Soil Science. 72, 1, p. 31-34 4 p.

Research output: Contribution to journalLetterpeer-review

Metagenomic and metatranscriptomic study of microbial metal resistance in an acidic pit lake

Ayala-Muñoz, D., Burgos, W. D., Sánchez-España, J., Couradeau, E., Falagán, C. & Macalady, J. L., Sep 2020, In: Microorganisms. 8, 9, p. 1-271350 271350 p., 1350.

Research output: Contribution to journalArticlepeer-review

Biological Soil Crusts as Modern Analogs for the Archean Continental Biosphere: Insights from Carbon and Nitrogen Isotopes

Thomazo, C., Couradeau, E., Giraldo-Silva, A., Marin-Carbonne, J., Brayard, A., Homann, M., Sansjofre, P., Lalonde, S. V. & Garcia-Pichel, F., Jul 1 2020, In: Astrobiology. 20, 7, p. 815-819 5 p.

Research output: Contribution to journalArticlepeer-review

Microhydrological niches in soils: How mucilage and EPS alter the biophysical properties of the rhizosphere and other biological hotspots

Benard, P., Zarebanadkouki, M., Brax, M., Kaltenbach, R., Jerjen, I., Marone, F., Couradeau, E., Felde, V. J. M. N. L., Kaestner, A. & Carminati, A., 2019, In: Vadose Zone Journal. 18, 1, 180211.

Research output: Contribution to journalArticlepeer-review

Probing the active fraction of soil microbiomes using BONCAT-FACS

Couradeau, E., Sasse, J., Goudeau, D., Nath, N., Hazen, T. C., Bowen, B. P., Chakraborty, R., Malmstrom, R. R. & Northen, T. R., Dec 1 2019, In: Nature communications. 10, 1, 2770.

Research output: Contribution to journalArticlepeer-review

Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere

Couradeau, E., Giraldo-Silva, A., De Martini, F. & Garcia-Pichel, F., Apr 3 2019, In: Microbiome. 7, 1, 55.

Research output: Contribution to journalArticlepeer-review

Optimizing de novo genome assembly from PCR-amplified metagenomes

Roux, S., Trubl, G., Goudeau, D., Nath, N., Couradeau, E., Ahlgren, N. A., Zhan, Y., Marsan, D., Chen, F., Fuhrman, J. A., Northen, T. R., Sullivan, M. B., Rich, V. I., Malmstrom, R. R. & Eloe-Fadrosh, E. A., 2019, In: PeerJ. 2019, 5, e6902.

Research output: Contribution to journalArticlepeer-review

In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation

Couradeau, E., Felde, V. J. M. N. L., Parkinson, D., Uteau, D., Rochet, A., Cuellar, C., Winegar, G., Peth, S., Northen, T. R. & Garcia-Pichel, F., Jun 28 2018, In: Frontiers in Environmental Science. 6, 65.

Research output: Contribution to journalArticlepeer-review

Large blooms of Bacillales (Firmicutes) underlie the response to wetting of cyanobacterial biocrusts at various stages of maturity

Karaoz, U., Couradeau, E., da Rocha, U. N., Lim, H. C., Northen, T., Garcia-Pichel, F. & Brodie, E. L., Mar 1 2018, In: mBio. 9, 2, e01366-16.

Research output: Contribution to journalArticlepeer-review

A new niche for anoxygenic phototrophs as endoliths

Roush, D., Couradeau, E., Guida, B., Neuer, S. & Garcia-Pichel, F., Feb 1 2018, In: Applied and environmental microbiology. 84, 4, e02055-17.

Research output: Contribution to journalArticlepeer-review