Estelle Couradeau

Affiliate Researcher
Titles and Affiliations
Assistant Professor, Ecosystem Science and Management

Research Summary

We work on environmental microbiomes, mostly from soils. We are interested in probing microbial activity and linking it to the emergent properties of the soil system such as spatial organization or nutrient status. Our work also involves simulating climate change scenarios and see how microbes are answering and how different soil communities might be more or less resilient. We use a broad range of tools from omics to microspectroscopies.

In the News

Research Keywords

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Projects

Recent Publications

Evaluation of the taxonomic accuracy and pathogenicity prediction power of 16 primer sets amplifying single copy marker genes in the Pseudomonas syringae species complex

Fautt, C., Hockett, K. L. & Couradeau, E., Aug 2023, In: Molecular plant pathology. 24, 8, p. 989-998 10 p.

Research output: Contribution to journalArticlepeer-review

BONCAT-FACS-Seq reveals the active fraction of a biocrust community undergoing a wet-up event

Trexler, R. V., Van Goethem, M. W., Goudeau, D., Nath, N., Malmstrom, R. R., Northen, T. R. & Couradeau, E., 2023, In: Frontiers in Microbiology. 14, 1176751.

Research output: Contribution to journalArticlepeer-review

Microbial carbon, sulfur, iron, and nitrogen cycling linked to the potential remediation of a meromictic acidic pit lake

Ayala-Muñoz, D., Macalady, J. L., Sánchez-España, J., Falagán, C., Couradeau, E. & Burgos, W. D., Dec 2022, In: ISME Journal. 16, 12, p. 2666-2679 14 p.

Research output: Contribution to journalArticlepeer-review

Novel Microorganisms Contribute to Biosulfidogenesis in the Deep Layer of an Acidic Pit Lake

Ayala-Muñoz, D., Burgos, W. D., Sánchez-España, J., Falagán, C., Couradeau, E. & Macalady, J. L., Jul 13 2022, In: Frontiers in Bioengineering and Biotechnology. 10, 867321.

Research output: Contribution to journalArticlepeer-review

Bypass and hyperbole in soil science: A perspective from the next generation of soil scientists

Portell, X., Sauzet, O., Balseiro-Romero, M., Benard, P., Cardinael, R., Couradeau, E., Danra, D. D., Evans, D. L., Fry, E. L., Hammer, E. C., Mamba, D., Merino-Martín, L., Mueller, C. W., Paradelo, M., Rees, F., M. W. Rossi, L., Schmidt, H., Schnee, L. S., Védère, C. & Vidal, A., Jan 2021, In: European Journal of Soil Science. 72, 1, p. 31-34 4 p.

Research output: Contribution to journalLetterpeer-review

Metagenomic and metatranscriptomic study of microbial metal resistance in an acidic pit lake

Ayala-Muñoz, D., Burgos, W. D., Sánchez-España, J., Couradeau, E., Falagán, C. & Macalady, J. L., Sep 2020, In: Microorganisms. 8, 9, p. 1-271350 271350 p., 1350.

Research output: Contribution to journalArticlepeer-review

Biological Soil Crusts as Modern Analogs for the Archean Continental Biosphere: Insights from Carbon and Nitrogen Isotopes

Thomazo, C., Couradeau, E., Giraldo-Silva, A., Marin-Carbonne, J., Brayard, A., Homann, M., Sansjofre, P., Lalonde, S. V. & Garcia-Pichel, F., Jul 1 2020, In: Astrobiology. 20, 7, p. 815-819 5 p.

Research output: Contribution to journalArticlepeer-review

Microhydrological niches in soils: How mucilage and EPS alter the biophysical properties of the rhizosphere and other biological hotspots

Benard, P., Zarebanadkouki, M., Brax, M., Kaltenbach, R., Jerjen, I., Marone, F., Couradeau, E., Felde, V. J. M. N. L., Kaestner, A. & Carminati, A., 2019, In: Vadose Zone Journal. 18, 1, 180211.

Research output: Contribution to journalArticlepeer-review

Probing the active fraction of soil microbiomes using BONCAT-FACS

Couradeau, E., Sasse, J., Goudeau, D., Nath, N., Hazen, T. C., Bowen, B. P., Chakraborty, R., Malmstrom, R. R. & Northen, T. R., Dec 1 2019, In: Nature communications. 10, 1, 2770.

Research output: Contribution to journalArticlepeer-review

Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere

Couradeau, E., Giraldo-Silva, A., De Martini, F. & Garcia-Pichel, F., Apr 3 2019, In: Microbiome. 7, 1, 55.

Research output: Contribution to journalArticlepeer-review

Optimizing de novo genome assembly from PCR-amplified metagenomes

Roux, S., Trubl, G., Goudeau, D., Nath, N., Couradeau, E., Ahlgren, N. A., Zhan, Y., Marsan, D., Chen, F., Fuhrman, J. A., Northen, T. R., Sullivan, M. B., Rich, V. I., Malmstrom, R. R. & Eloe-Fadrosh, E. A., 2019, In: PeerJ. 2019, 5, e6902.

Research output: Contribution to journalArticlepeer-review

In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation

Couradeau, E., Felde, V. J. M. N. L., Parkinson, D., Uteau, D., Rochet, A., Cuellar, C., Winegar, G., Peth, S., Northen, T. R. & Garcia-Pichel, F., Jun 28 2018, In: Frontiers in Environmental Science. 6, 65.

Research output: Contribution to journalArticlepeer-review

Large blooms of Bacillales (Firmicutes) underlie the response to wetting of cyanobacterial biocrusts at various stages of maturity

Karaoz, U., Couradeau, E., da Rocha, U. N., Lim, H. C., Northen, T., Garcia-Pichel, F. & Brodie, E. L., Mar 1 2018, In: mBio. 9, 2, e01366-16.

Research output: Contribution to journalArticlepeer-review

A new niche for anoxygenic phototrophs as endoliths

Roush, D., Couradeau, E., Guida, B., Neuer, S. & Garcia-Pichel, F., Feb 1 2018, In: Applied and environmental microbiology. 84, 4, e02055-17.

Research output: Contribution to journalArticlepeer-review

A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix

Swenson, T. L., Couradeau, E., Bowen, B. P., De Philippis, R., Rossi, F., Mugnai, G. & Northen, T. R., Aug 1 2018, In: Plant and Soil. 429, 1-2, p. 53-64 12 p.

Research output: Contribution to journalArticlepeer-review