Research Summary
Research interests include modeling/optimization of directed evolution protocols for protein engineering, optimization in metabolic engineering and bioinformatics, molecular and product design, and supply chain planning and scheduling.Research Keywords
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Recent Publications
Building kinetic models for metabolic engineering
Foster, C. J., Wang, L., Dinh, H. V., Suthers, P. F. & Maranas, C. D., Feb 2021, In: Current Opinion in Biotechnology. 67, p. 35-41 7 p.Research output: Contribution to journal › Review article › peer-review
A genome-scale metabolic model of anabaena 33047 to guide genetic modifications to overproduce nylon monomers
Hendry, J. I., Dinh, H. V., Sarkar, D., Wang, L., Bandyopadhyay, A., Pakrasi, H. B. & Maranas, C. D., Mar 2021, In: Metabolites. 11, 3, 168.Research output: Contribution to journal › Article › peer-review
Engineering biology approaches for food and nutrient production by cyanobacteria
Liu, D., Liberton, M., Hendry, J. I., Aminian-Dehkordi, J., Maranas, C. D. & Pakrasi, H. B., Feb 2021, In: Current Opinion in Biotechnology. 67, p. 1-6 6 p.Research output: Contribution to journal › Review article › peer-review
Elucidation of trophic interactions in an unusual single-cell nitrogen-fixing symbiosis using metabolic modeling
Sarkar, D., Landa, M., Bandyopadhyay, A., Pakrasi, H. B., Zehr, J. P. & Maranas, C. D., May 2021, In: PLoS computational biology. 17, 5, e1008983.Research output: Contribution to journal › Article › peer-review
Recent advances in constraint and machine learning-based metabolic modeling by leveraging stoichiometric balances, thermodynamic feasibility and kinetic law formalisms
Suthers, P. F., Foster, C. J., Sarkar, D., Wang, L. & Maranas, C. D., Jan 2021, In: Metabolic engineering. 63, p. 13-33 21 p.Research output: Contribution to journal › Article › peer-review
Computationally Prospecting Potential Pathways from Lignin Monomers and Dimers toward Aromatic Compounds
Wang, L. & Maranas, C. D., May 21 2021, In: ACS Synthetic Biology. 10, 5, p. 1064-1076 13 p.Research output: Contribution to journal › Article › peer-review
Bacterial colonization reprograms the neonatal gut metabolome
Bittinger, K., Zhao, C., Li, Y., Ford, E., Friedman, E. S., Ni, J., Kulkarni, C. V., Cai, J., Tian, Y., Liu, Q., Patterson, A. D., Sarkar, D., Chan, S. H. J., Maranas, C., Saha-Shah, A., Lund, P., Garcia, B. A., Mattei, L. M., Gerber, J. S., Elovitz, M. A. & 9 others, , Jun 1 2020, In: Nature Microbiology. 5, 6, p. 838-847 10 p.Research output: Contribution to journal › Article › peer-review
Computational biophysical characterization of the SARS-CoV-2 spike protein binding with the ACE2 receptor and implications for infectivity
Chowdhury, R., Boorla, V. S. & Maranas, C. D., 2020, In: Computational and Structural Biotechnology Journal. 18, p. 2573-2582 10 p.Research output: Contribution to journal › Article › peer-review
From directed evolution to computational enzyme engineering—A review
Chowdhury, R. & Maranas, C. D., Mar 1 2020, In: AIChE Journal. 66, 3, e16847.Research output: Contribution to journal › Article › peer-review
IPRO+/−: Computational Protein Design Tool Allowing for Insertions and Deletions
Chowdhury, R., Grisewood, M. J., Boorla, V. S., Yan, Q., Pfleger, B. F. & Maranas, C. D., Dec 1 2020, In: Structure. 28, 12, p. 1344-1357.e4Research output: Contribution to journal › Article › peer-review